Reproducible image-based profiling with Pycytominer

Erik Serrano, Srinivas Niranj Chandrasekaran, Dave Bunten, Kenneth I. Brewer, Jenna Tomkinson, Roshan Kern, Michael Bornholdt, Stephen J. Fleming, Ruifan Pei, John Arevalo, Hillary Tsang, Vincent Rubinetti, Callum Tromans-Coia, Tim Becker, Erin Weisbart, Charlotte Bunne, Alexandr A. Kalinin, Rebecca Senft, Stephen J. Taylor, Nasim Jamali, Adeniyi Adeboye, Hamdah Shafqat Abbasi, Allen Goodman, Juan C. Caicedo, […]

HSBP7 rescue of a titin cardiomyopathy identified by morphological profiling

Anant Chopra, Ruifan Pei, Elizabeth Brydon, Elizabeth Lee, Matthew Hill, Nasim Jamali, Jiangchuan Ye, Carolina Roselli, Carmen Diaz Verdugo, Stephen J. Fleming, Ling Xiao, Zeina Sayed, Maria Kost-Alimova, Carla Klattenhoff, Sikander Hayat, Anne Carpenter, Beth Cimini, Shantanu Singh, Patrick Ellinor ResearchSquare Preprint, posted July 8, 2024

Learning representations for image-based profiling of perturbations

Nikita Moshkov, Michael Bornholdt, Santiago Benoit, Matthew Smith, Claire McQuin, Allen Goodman, Rebecca A. Senft, Yu Han, Mehrtash Babadi, Peter Horvath, Beth A. Cimini, Anne E. Carpenter, Shantanu Singh, and Juan C. Caicedo. Nature Communications 15, 1594 (2024). Collaboration with Carpenter-Singh and Caicedo Labs

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